Fall 2022

● The Weekly Wednesday Wartik Genomics Lecture Series (WWWGLS) is held in 501 Wartik Lab (large commons area) on Wednesdays at 3 pm, unless noted otherwise.
● Coffee, tea, and snacks are usually served after the presentation.
● PSU faculty can nominate speakers via this form
● PSU affiliates can sign up to receive seminar announcements using L-WWWGLS@lists.psu.edu.

Date	Presenter(s)	Topic
August 31 4:00 pm	David Koslicki Host: Francesca Chiaromonte	FracMinHash: quickly estimate genome/metagenome similarity, ANI, and AAI
September 7 4:00 pm	Marzia A Cremona Host: Francesca Chiaromonte	Functional data analysis of high-resolution "Omics" data
September 14 4:00 pm	Angelika Lahnsteiner University of Salzburg, Austria Host: Kateryna Makova	Permanganate S1 footprinting with direct adapter ligation opens new possibilities in detecting non-B DNA structures responsible for changes in DNA methylation in lung cancer.
September 21 4:00 pm	Qiuhai Zeng; Qimin Zhang PSU Host: Qunhua Li	JOnTAD: Joint hierarchical TAD caller for high resolution, single cell and bulk cell Hi-C data; Accurate assembly of multi-end RNA-seq data with Scallop2
October 4 Paterno Library room 102 (Foster Auditorium)	Kateryna Makova PSU Host: Kateryna Makova Zoom URL	Detection and dynamics of mitochondrial mutations in mammalian populations and single cells with applications to aging and diseases
October 12 4:00 pm	Matthias Weissensteiner PSU Host: Kateryna Makova	Non-B DNA: Distribution on the telomere-to-telomere human Y chromosome and effects on sequencing success
October 19 4:00 pm	Anton Nekrutenko PSU Host: Anton Nekrutenko	The next decade of Galaxy [Slides]
October 26 4:00 pm
November 2 4:00 pm	Zachary A. Szpiech PSU Host: Paul Medvedev Zoom URL	Haplotype-based Scans for Detecting Natural Selection
November 9 4:00 pm	Daniel Savic St. Jude Children's Research Hospital Host: Ross Hardison Zoom URL	Cis-regulatory disruptions impacting canonical Wnt signaling promote glucocorticoid resistance in childhood acute lymphoblastic leukemia
November 16 4:00 pm	Jian Wang PSU College of Medicine Host: Paul Medvedev Zoom URL	Machine learning is revolutionizing structural bioinformatics [Slides]
November 30 4:00 pm	Francesca Chiaromonte PSU Host: Ross Hardison Zoom URL	Reducing, selecting and leveraging structure in contemporary data – some reflections, looking ahead
December 7 4:00 pm	Jennifer Wagner PSU Host: George Perry Zoom URL	Hot Topics in Genetics/omics Law