CCBB will host a one-day workshop on emerging methods for sequence analysis. The workshop will feature a mix of invited speakers and local Penn State speakers. It will be held on June 22nd (2018), immediately following the PSU Boot Camp on Data Reproducibility.
Please register here by May 31st. Registration is free. Breakfast and lunch will be provided for registered participants.
The workshop will be held on June 22nd, 2018, in the ASI auditorium.
|9:00||Invited talk: Elana Fertig (JHU)||Enter the matrix: factorization uncovers knowledge from omics|
|10:00||Marzia Cremona||Discovering functional motifs in “Omics” curves using probabilistic K-mean with local alignment|
|10:50||Invited talk: Rob Patro (Stony Brook)||Deconvolution, dictionaries and de Bruijn graphs : algorithm and data structure design for modern genomics|
|11:50||Kristoffer Sahlin||IsoCon: Deciphering highly similar multi-copy gene transcripts from PacBio Iso-Seq data|
|12:05||Wilfried Guiblet||A new dimension to DNA sequencing: polymerization kinetics at non-B DNA structures|
|12:20||Lunch with Posters|
|1:50||Invited talk: Seyoung Kim (CMU)||Statistical methods for learning gene networks under SNP perturbation|
|2:50||Guray Kuzu||Using topic modeling to identify protein groups from ChIPexo data|
|3:05||Guanjue Xiang||PKnorm: normalizing sequencing depth and signal-to-noise ratio between epigenomic data|
|3:40||Invited talk: Adam Phillippy (NIH)||Can nanopore sequencing finally finish the human genome?|
|4:40||Tao Yang||Detecting the differentially interacting genomic regions from Hi-C data|
|6 PM||Dinner (by invitation)|